Whiteson, Katrine L: search on Z-Library

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1

Mechanisms of Site-Specific Recombination*

Grindley, Nigel D.F., Whiteson, Katrine L., Rice, Phoebe A.

Journal:

Annual Review of Biochemistry

Year:

2006

Language:

english

File:

PDF, 1.32 MB

english, 2006

2

The emergence of microbiome centres

Martiny, Jennifer B. H., Whiteson, Katrine L., Bohannan, Brendan J. M., David, Lawrence A., Hynson, Nicole A., McFall-Ngai, Margaret, Rawls, John F., Schmidt, Thomas M., Abdo, Zaid, Blaser, Martin J.,

Journal:

Nature Microbiology

Year:

2020

File:

PDF, 668 KB

2020

3

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation

Quinn, Robert A, Whiteson, Katrine, Lim, Yan-Wei, Salamon, Peter, Bailey, Barbara, Mienardi, Simone, Sanchez, Savannah E, Blake, Don, Conrad, Doug, Rohwer, Forest

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.70 MB

english, 2014

4

Longitudinal Microbiome Composition and Stability Correlate with Increased Weight and Length of Very-Low-Birth-Weight Infants

Yee, Alyson L., Miller, Elizabeth, Dishaw, Larry J., Gordon, Jessica M., Ji, Ming, Dutra, Samia, Ho, Thao T. B., Gilbert, Jack A., Groer, Maureen, Whiteson, Katrine L.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.31 MB

english, 2019

5

SPIE Proceedings [SPIE SPIE Nanoscience + Engineering - San Diego, California, United States (Sunday 9 August 2015)] Biosensing and Nanomedicine VIII - Surface enhanced Raman scattering for detection of Pseudomonas aeruginosa quorum sensing compounds

Mohseni, Hooman, Agahi, Massoud H., Razeghi, Manijeh, Thrift, Will, Bhattacharjee, Arunima, Darvishzadeh-Varcheie, Mahsa, Lu, Ying, Hochbaum, Allon, Capolino, Filippo, Whiteson, Katrine, Ragan, Regina

Year:

2015

Language:

english

File:

PDF, 816 KB

english, 2015

6

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation

Quinn, Robert A, Whiteson, Katrine, Lim, Yan-Wei, Salamon, Peter, Bailey, Barbara, Mienardi, Simone, Sanchez, Savannah E, Blake, Don, Conrad, Doug, Rohwer, Forest

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 61 KB

english, 2015

7

Longitudinal Monitoring of Biofilm Formation via Robust SERS Quantification of Pseudomonas aeruginosa-Produced Metabolite

Nguyen, Cuong Quoc, Thrift, William John, Bhattacharjee, Arunima, Ranjbar, Saba, Gallagher, Tara, Darvishzadeh-Varcheie, Mahsa, Sanderson, Robert Noboru, Capolino, Filippo, Whiteson, Katrine, Baldi, P

Journal:

ACS Applied Materials & Interfaces

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

8

Vive la Persistence: Engineering Human Microbiomes in the 21st Century

Whiteson, Katrine L.

Journal:

Year:

2018

Language:

english

File:

PDF, 300 KB

english, 2018

9

Infant gut microbial colonization and health: recent findings from metagenomics studies

Fischer, Adrien, Whiteson, Katrine, Lazarevic, Vladimir, Hibbs, Jonathan, Francois, Patrice, Schrenzel, Jacques

Journal:

Journal of Integrated OMICS

Year:

2012

File:

PDF, 1.04 MB

2012

10

Bacteria in the airways of patients with cystic fibrosis are genetically capable of producing VOCs in breath

Bos, Lieuwe D J, Meinardi, Simone, Blake, Donald, Whiteson, Katrine

Journal:

Journal of Breath Research

Year:

2016

Language:

english

File:

PDF, 975 KB

english, 2016

11

Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa

Phan, Joann, Gallagher, Tara, Oliver, Andrew, England, Whitney, Whiteson, Katrine

Journal:

FEMS Microbiology Letters

Year:

2018

Language:

english

File:

PDF, 619 KB

english, 2018

12

Getting our fingers on the pulse of slow growing bacteria in hard to reach places

Gallagher, Tara, Phan, Joann, Whiteson, Katrine

Journal:

Journal of Bacteriology

Year:

2018

Language:

english

File:

PDF, 1005 KB

english, 2018

13

Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients

Wandro, Stephen, Carmody, Lisa, Gallagher, Tara, LiPuma, John J., Whiteson, Katrine, Turnbaugh, Peter J.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.24 MB

english, 2017

14

Going viral: next-generation sequencing applied to phage populations in the human gut

Reyes, Alejandro, Semenkovich, Nicholas P., Whiteson, Katrine, Rohwer, Forest, Gordon, Jeffrey I.

Journal:

Nature Reviews Microbiology

Year:

2012

Language:

english

File:

PDF, 430 KB

english, 2012

15

Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa -Derived Metabolites

Gao, Bei, Gallagher, Tara, Zhang, Ying, Elbadawi-Sidhu, Mona, Lai, Zijuan, Fiehn, Oliver, Whiteson, Katrine L., McMahon, Katherine

Journal:

Year:

2018

Language:

english

File:

PDF, 840 KB

english, 2018

16

Lying in Wait: Modeling the Control of Bacterial Infections via Antibiotic-Induced Proviruses

Clifton, Sara M., Kim, Ted, Chandrashekhar, Jayadevi H., O’Toole, George A., Rapti, Zoi, Whitaker, Rachel J., Whiteson, Katrine L.

Journal:

Year:

2019

Language:

english

File:

PDF, 827 KB

english, 2019

17

The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis

Wandro, Stephen, Osborne, Stephanie, Enriquez, Claudia, Bixby, Christine, Arrieta, Antonio, Whiteson, Katrine, Krajmalnik-Brown, Rosa

Journal:

Year:

2018

Language:

english

File:

PDF, 635 KB

english, 2018

18

The phosphate binder ferric citrate alters the gut microbiome in rats with chronic kidney disease

Lau, Wei Ling, Vaziri, Nosratola D, Nunes, Ane CF, Comeau, Andre M, Langille, Morgan GI, England, Whitney, Khazaeli, Mahyar, Suematsu, Yasunori, Phan, Joann, Whiteson, Katrine

Journal:

Journal of Pharmacology and Experimental Therapeutics

Year:

2018

Language:

english

File:

PDF, 1.36 MB

english, 2018

19

Thriving Under Stress: Pseudomonas aeruginosa Outcompetes the Background Polymicrobial Community Under Treatment Conditions in a Novel Chronic Wound Model

Phan, Joann, Ranjbar, Saba, Kagawa, Miki, Gargus, Matthew, Hochbaum, Allon Israel, Whiteson, Katrine L.

Journal:

Frontiers in Cellular and Infection Microbiology

Year:

2020

File:

PDF, 1.95 MB

2020

20

Study of inter- and intra-individual variations in the salivary microbiota

Vladimir Lazarevic, Katrine Whiteson, David Hernandez, Patrice François, Jacques Schrenzel

Journal:

Year:

2010

Language:

english

File:

PDF, 1.23 MB

english, 2010

21

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation

Whiteson, Katrine L, Meinardi, Simone, Lim, Yan Wei, Schmieder, Robert, Maughan, Heather, Quinn, Robert, Blake, Donald R, Conrad, Douglas, Rohwer, Forest

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

22

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome

Quinn, Robert A, Phelan, Vanessa V, Whiteson, Katrine L, Garg, Neha, Bailey, Barbara A, Lim, Yan Wei, Conrad, Douglas J, Dorrestein, Pieter C, Rohwer, Forest L

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

23

Transcriptional Variation of Diverse Enteropathogenic Escherichia coli Isolates under Virulence-Inducing Conditions

Hazen, Tracy H., Daugherty, Sean C., Shetty, Amol C., Nataro, James P., Rasko, David A., Whiteson, Katrine L.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.25 MB

english, 2017

24

The salivary microbiome, assessed by a high-throughput and culture-independent approach

Lazarevic, Vladimir, Whiteson, Katrine, François, Patrice, Schrenzel, Jacques

Journal:

Journal of Integrated OMICS

Year:

2011

Language:

english

File:

PDF, 1.18 MB

english, 2011

25

PQS produced by the Pseudomonas aeruginosa stress response repels swarms away from bacteriophage and antibiotics

Bru, Jean-Louis, Rawson, Brandon, Trinh, Calvin, Whiteson, Katrine, Høyland-Kroghsbo, Nina Molin, Siryaporn, Albert

Journal:

Journal of Bacteriology

Year:

2019

Language:

english

File:

PDF, 3.03 MB

english, 2019

26

Quantitative Models of Phage-Antibiotic Combination Therapy

Rodriguez-Gonzalez, Rogelio A., Leung, Chung Yin, Chan, Benjamin K., Turner, Paul E., Weitz, Joshua S., Whiteson, Katrine L.

Journal:

Year:

2020

File:

PDF, 466 KB

2020

27

Fiber Force: A Fiber Diet Intervention in an Advanced Course-Based Undergraduate Research Experience (CURE) Course â

Sewall, Julia Massimelli, Oliver, Andrew, Denaro, Kameryn, Chase, Alexander B., Weihe, Claudia, Lay, Mi, Martiny, Jennifer B. H., Whiteson, Katrine

Journal:

Journal of Microbiology and Biology Education

Year:

2020

File:

PDF, 1.25 MB

2020

28

Fecal Microbiota Transplantation for the Treatment of Refractory Recurrent Urinary Tract Infection

Jeney, Sarah E. S., Lane, Felicia, Oliver, Andrew, Whiteson, Katrine, Dutta, Sonia

Journal:

Obstetrics & Gynecology

Year:

2020

File:

PDF, 561 KB

2020

29

Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19

Rothman, Jason A., Loveless, Theresa B., Griffith, Madison L., Steele, Joshua A., Griffith, John F., Whiteson, Katrine L., Roux, Simon

Journal:

Microbiology Resource Announcements

Year:

2020

File:

PDF, 390 KB

2020

30

Stable isotope profiles reveal active production of VOCs from human-associated microbes

Phan, Joann, Meinardi, Simone, Barletta, Barbara, Blake, Donald R, Whiteson, Katrine

Journal:

Journal of Breath Research

Year:

2017

Language:

english

File:

PDF, 881 KB

english, 2017

31

Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study

Hahn, Andrea, Whiteson, Katrine, Davis, Trenton J., Phan, Joann, Sami, Iman, Koumbourlis, Anastassios C., Freishtat, Robert J., Crandall, Keith A., Bean, Heather D.

Journal:

Frontiers in Cellular and Infection Microbiology

Year:

2020

File:

PDF, 1.52 MB

2020

32

Editorial: Virus Discovery by Metagenomics: The (Im)possibilities

Dutilh, Bas E., Reyes, Alejandro, Hall, Richard J., Whiteson, Katrine L.

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 196 KB

english, 2017

33

A genomic perspective on a new bacterial genus and species from theAlcaligenaceaefamily,Basilea psittacipulmonis

Whiteson, Katrine L, Hernandez, David, Lazarevic, Vladimir, Gaia, Nadia, Farinelli, Laurent, François, Patrice, Pilo, Paola, Frey, Joachim, Schrenzel, Jacques

Journal:

Year:

2014

Language:

english

File:

PDF, 972 KB

english, 2014

34

Ecological networking of cystic fibrosis lung infections

Quinn, Robert A, Whiteson, Katrine, Lim, Yan Wei, Zhao, Jiangchao, Conrad, Douglas, LiPuma, John J, Rohwer, Forest, Widder, Stefanie

Journal:

npj Biofilms and Microbiomes

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

35

Identification of a Potential General Acid/Base in the Reversible Phosphoryl Transfer Reactions Catalyzed by Tyrosine Recombinases: Flp H305

Katrine L. Whiteson, Yu Chen, Neeraj Chopra, Amy C. Raymond, Phoebe A. Rice

Journal:

Chemistry & Biology

Year:

2007

Language:

english

File:

PDF, 1.08 MB

english, 2007

36

A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria

Choudoir, Mallory, Rossabi, Sam, Gebert, Matthew, Helmig, Detlev, Fierer, Noah, Whiteson, Katrine L.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.22 MB

english, 2019

37

Longitudinal Microbiome Composition and Stability Correlate with Increased Weight and Length of Very-Low-Birth-Weight Infants

Yee, Alyson L., Miller, Elizabeth, Dishaw, Larry J., Gordon, Jessica M., Ji, Ming, Dutra, Samia, Ho, Thao T. B., Gilbert, Jack A., Groer, Maureen, Whiteson, Katrine L.

Journal:

Year:

2019

File:

PDF, 1.31 MB

2019

38

Resistance Evolution against Phage Combinations Depends on the Timing and Order of Exposure

Wright, Rosanna C. T., Friman, Ville-Petri, Smith, Margaret C. M., Brockhurst, Michael A., Whiteson, Katrine L., Whiteley, Marvin

Journal:

Year:

2019

Language:

english

File:

PDF, 1.14 MB

english, 2019

39

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing

Vladimir Lazarevic, Katrine Whiteson, Susan Huse, David Hernandez, Laurent Farinelli, Magne Østerås, Jacques Schrenzel, Patrice François

Journal:

Journal of Microbiological Methods

Year:

2009

Language:

english

File:

PDF, 567 KB

english, 2009

40

636 - Convergence Toward Donor Microbial and Metabolomic Profiles after Fecal Microbiota Transplantation in Pediatric Ulcerative Colitis Patients

Nusbaum, David, Pervolarakis, Nicholas, Ramsy, Natalie, England, Whitney, Michail, Sonia, Whiteson, Katrine

Journal:

Gastroenterology

Year:

2018

Language:

english

File:

PDF, 455 KB

english, 2018

41

Regulation of AmpC-Driven Î²-Lactam Resistance in Pseudomonas aeruginosa : Different Pathways, Different Signaling

Torrens, Gabriel, HernÃ¡ndez, Sara BelÃ©n, Ayala, Juan Alfonso, Moya, Bartolome, Juan, Carlos, Cava, Felipe, Oliver, Antonio, Whiteson, Katrine L.

Journal:

Year:

2019

File:

PDF, 1.32 MB

2019

42

A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli

Balasubramanian, Divya, Ragunathan, Preethi T., Fei, Jingyi, Vanderpool, Carin K., Whiteson, Katrine L.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.68 MB

english, 2016

43

Bacteriophages Synergize with the Gut Microbial Community To Combat Salmonella

Hu, Yue O. O., Hugerth, Luisa W., Bengtsson, Carina, Alisjahbana, Arlisa, Seifert, Maike, Kamal, Anaga, Sjöling, Åsa, Midtvedt, Tore, Norin, Elisabeth, Du, Juan, Engstrand, Lars, Whiteson, Katrine L.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.63 MB

english, 2018

44

Analysis of the salivary microbiome using culture-independent techniques

Vladimir Lazarevic, Katrine Whiteson, Nadia Gaïa, Yann Gizard, David Hernandez, Laurent Farinelli, Magne Østerås, Patrice François, Jacques Schrenzel

Journal:

Journal of Clinical Bioinformatics

Year:

2012

Language:

english

File:

PDF, 508 KB

english, 2012

45

Mechanistic Model of Rothia mucilaginosa Adaptation toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic Data

Lim, Yan Wei, Schmieder, Robert, Haynes, Matthew, Furlan, Mike, Matthews, T. David, Whiteson, Katrine, Poole, Stephen J., Hayes, Christopher S., Low, David A., Maughan, Heather, Edwards, Robert, Conra

Journal:

Year:

2013

Language:

english

File:

PDF, 866 KB

english, 2013

46

The Upper Respiratory Tract as a Microbial Source for Pulmonary Infections in Cystic Fibrosis. Parallels from Island Biogeography

Whiteson, Katrine L., Bailey, Barbara, Bergkessel, Megan, Conrad, Douglas, Delhaes, Laurence, Felts, Ben, Harris, J. Kirk, Hunter, Ryan, Lim, Yan Wei, Maughan, Heather, Quinn, Robert, Salamon, Peter,

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2014

Language:

english

File:

PDF, 770 KB

english, 2014

47

Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients

Nusbaum, David J, Sun, Fengzhu, Ren, Jie, Zhu, Zifan, Ramsy, Natalie, Pervolarakis, Nicholas, Kunde, Sachin, England, Whitney, Gao, Bei, Fiehn, Oliver, Michail, Sonia, Whiteson, Katrine

Journal:

FEMS Microbiology Ecology

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

48

Neisseria gonorrhoeae Exposed to Sublethal Levels of Hydrogen Peroxide Mounts a Complex Transcriptional Response

Quillin, Sarah J., Hockenberry, Adam J., Jewett, Michael C., Seifert, H Steven, Whiteson, Katrine L.

Journal:

Year:

2018

Language:

english

File:

PDF, 11.21 MB

english, 2018

49

Noma Affected Children from Niger Have Distinct Oral Microbial Communities Based on High-Throughput Sequencing of 16S rRNA Gene Fragments

Whiteson, Katrine L., Lazarevic, Vladimir, Tangomo-Bento, Manuela, Girard, Myriam, Maughan, Heather, Pittet, Didier, Francois, Patrice, Schrenzel, Jacques, Small, Pamela L. C.

Journal:

PLoS Neglected Tropical Diseases

Year:

2014

Language:

english

File:

PDF, 1.16 MB

english, 2014

50

Interleukin 1α-Deficient Mice Have an Altered Gut Microbiota Leading to Protection from Dextran Sodium Sulfate-Induced Colitis

Nunberg, Moran, Werbner, Nir, Neuman, Hadar, Bersudsky, Marina, Braiman, Alex, Ben-Shoshan, Moshe, Ben Izhak, Meirav, Louzoun, Yoram, Apte, Ron N., Voronov, Elena, Koren, Omry, Whiteson, Katrine L.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.95 MB

english, 2018

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